sccoda.model.other_models.SimpleModel.get_chains_after_burnin¶
-
SimpleModel.
get_chains_after_burnin
(samples, kernel_results, num_burnin, is_nuts=False)¶ Application of burn-in after MCMC sampling. Cuts the first
num_burnin
samples from all inferred variables and diagnostic statistics.- Parameters
- Return type
- Returns
MCMC chain without burn-in, sampling statistics, acceptance rate
states_burnin – Kernel states without burn-in samples
stats – sampling statistics
p_accept – acceptance rate of MCMC process