sccoda.model.other_models.ANCOMBCModel

class sccoda.model.other_models.ANCOMBCModel(data, covariate_column='x_0')

Wrapper for using the ANCOMBC package for R (Lin and Peddada, 2020)

Methods

eval_model(ground_truth[, alpha, fdr_correct])	Evaluates array of p-values compared to a ground truth via binary classification.
fit_model([method, lib_cut, r_home, r_path, …])	Fits ANCOM with bias correction model.