sccoda.model.other_models.ALRModel_wilcoxon

class sccoda.model.other_models.ALRModel_wilcoxon(data, covariate_column='x_0')

Implements a ALR transform and subsequent Wilcoxon rank-sum test on each cell type.

Methods

eval_model(ground_truth[, alpha, fdr_correct])	Evaluates array of p-values compared to a ground truth via binary classification.
fit_model(reference_cell_type)	Fits ALR model with Wilcoxon rank-sum test