Installation¶
A functioning python environment (>=3.8) is necessary to run this package.
This package uses the tensorflow (>= 2.4) and tensorflow-probability (>=0.12) packages. The GPU versions of these packages have not been tested with scCODA and are thus not recommended.
To install scCODA via pip, call:
pip install sccoda
To install scCODA from source:
Navigate to the directory you want scCODA in
Clone the repository from github:
git clone https://github.com/theislab/scCODA
Navigate to the root directory of scCODA:
cd scCODA
Install dependencies:
pip install -r requirements.txt
Import scCODA in a Python session via:
import sccoda